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  • 2 Similar Profiles
Escherichia coli Medicine & Life Sciences
Mutation Medicine & Life Sciences
RNA Medicine & Life Sciences
Riboswitch Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Medicine & Life Sciences
Bacteria Medicine & Life Sciences
Messenger RNA Medicine & Life Sciences

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Research Output 2000 2016

  • 51 Article
  • 4 Review article
  • 2 Conference contribution
  • 1 Comment/debate
5 Citations

Reproducibility of fluorescent expression from engineered biological constructs in E. coli

Beal, J. , Haddock-Angelli, T. , Gershater, M. , De Mora, K. , Lizarazo, M. , Hollenhorst, J. , Rettberg, R. , Demling, P. , Hanke, R. , Osthege, M. , Schechtel, A. , Sudarsan, S. , Zimmermann, A. , Gabryelczyk, B. , Ikonen, M. , Salmela, M. , Acar, M. , Aktas, M. F. , Bestepe, F. , Ceylan, F. S. & 607 others Cigdem, S., Dohan, M., Elitok, M., Gunduz, M., Gunduz, E., Hatipoglu, O. F., Kaya, T., Sayin, O., Tapan, S., Tereci, O. F., Uçar, A., Yilmaz, M., Barrick, J., Gutierrez, A., Mishler, D., Monk, J., Mortensen, K., Shin, N., Watkins, E., Chen, Y., Jin, Y., Shi, Y., Zhang, H. M., Ono, B., Paino, I. M. M., Ribovski, L., Silva, I., Zampronio, D. K., Birkholz, N., Busche, R. F., Konzock, O., Lippold, S., Ludwig, C., Philippi, M., Platz, L., Sigismund, C., Weber, S., Wehrs, M., Werchau, N., Wronska, A., Yen, Z. Z., Agarwal, Y., Appleton, E., Densmore, D., Esmurria, A., Lewis, K., Pacheco, A., Bruchez, M., Peters, D., Telmer, C., Wang, L., Canas-Duarte, S., Giraldo-Perez, D., Gomez-Garzon, C., Madrid-Wolff, J., Marin-Medina, N., Mazzanti, V., Rodriguez-Forero, L., Scher, E., Dowell, R., O'Hara, S., Pogoda, C. S., Shattuck, K., Altintas, A., Bali, A. P., Bech, R., Egholm, A., Hansen, A. S. L., Jensen, K., Karlsen, K. B., Mosbech, C., Belkhelfa, S., Berenger, N., Bodinier, R., Jacry, C., Matabishi-Bibi, L., Parutto, P., Zaworski, J., De Vries, A., De Wijs, F., Elbert, R., Hielkema, L., Jagadeesan, C., Jayawardhana, B., Kuipers, O., Lauxen, A., Meijer, T., Mous, S., Van Raaphorst, R., Saraf, A., Schepers, O., Smits, O., Veening, J. W., Weme, R. D. O., Wieske, L., Ainsworth, C., Spencer-Milnes, X., Ávila, A. G., Gamez, E. C., Huerta, A. L. T., Ramirez, C. A. M., Popp, P., Radeck, J., Sommer, A., Li, X., Wu, Q., Zhao, H., Zhao, R., Bastuzel, I., Ceyhan, Y., Gursel, M., Kizil, B., Kumru, I., Kuvvet, Y., Tercan, H., Yuksel, S., Niyazmetova, L., Ang, T., Black, L., Kelly, C., Wadhams, G., Basier, C., Czerwinska, U., Ananda, C. S., Al Azhar, M., Elviantari, A., Fitriana, M., Witarto, A. B., Yulianti, Fangxing, J., Hou, Q., Pei, W., Rifei, C., Rong, W., Wei, H., Yushan, Z., Jianguo, H., Lai, D., Li, P., Liu, J., Ni, C., Zhang, Q., Cadenas, C., Canabal, E. J. Z., Cantu, C. N. A., Cantu, M. A. V., Canedo, E. C., Cordova, C. M. V., De La Paz Espinosa, J. A., Garcia, C. E. A., Heredia, A. L. N., Hernandez, A., Jauregui, S. V., Montiel, E. R., Morales, E. S., Morales, Y. M. C., Pena, O. A. C., Ramirez-Rodríguez, E. A., Trejo, E. V., Ceja, J. G. R., Hernandez, J. E. M., Hernandez, M. A. P., Perez, E. A., Ramirez, R. P. T., Rocha, J. C. M., Sanchez, A., Vazquez, C. M. G., Hanzel, M., Mohand-Said, S., Sawar, S., Siriwardena, D., Tzahristos, A., Anlind, N., Friberg, M., Gullberg, E., Herman, S., Christensen, D., Gertsch, S., Maxfield, C., Miller, C., Putman, R., Bauerl, C., Lopez, L. T. E., Huet-Trujillo, E., Vilar, M. V., Birk, M. S., Claassens, N., De Koster, W., Van Rosmalen, R., Wu, W. Y., Davies, S., Goss, D., Rostain, W., Tye, C., Yousaf, W., Farny, N., LaJeunesse, C., Turland, A., Chen, A., Chen, J., Chen, Y., Chen, Z., Fang, B., Fu, X., Guo, X., Jiang, Y., Lei, Y., Li, J., Li, Z., Liu, C., Liu, W., Liu, Y., Lv, Y., Ruan, Q., Su, Y., Tang, C., Wang, Y., Wu, F., Yan, X., Zhang, R., Zhang, T., Isaacs, F., Leyva-Hernandez, A., Ma, N., Mao, S., Naidu, Y., Miinalainen, T., Aruanno, M., Calendini, D., Chabert, Y., Chambonnier, G., Choukour, M., De Gaulejac, E., Houy, C., Levier, A., Logger, L., Nin, S., Prima, V., Sturgis, J. N., Fang, B., Cigdem, S., Gutierrez, A., Poondla, R., Reddy, S., Rocha, T., Schulte, N., Wehle, D., Jackowski, M. E., Craig, S. R., Mirzarafie-Ahi, A., Parris, E., Prout, L., Steijl, B., Wellman, R., Fan, Z., Jing, Z., Wei, Y., Yuanzhan, Y., Zhaosen, W., Appletion, E., Chen, J., Patil, A., Priracha, S., Ryan, K., Salvador, N., Viola, J., Boralli, C. M. S., Bramorski, C. B., Cancino-Bernardi, J., De Lima, A. L., Lins, P. M. P., Melo, C. C., Mendonca, D. C., Mosqueiro, T., Silva, E., Vasconcelos, G., Asthana, R., Lee, D., Yu, M., Choi, P., Lau, E., Lau, K., Ying, O., Malone, B., Young, P., Ceney, A., Hawthorne, D., Lian, S., Mellentine, S., Miller, D., Moreira, B. C., Peebles, C., Smith, O., Walsh, K., Zimont, A., Brasino, M., Donovan, M., Young, H., Bejvl, J., Georgiev, D., Kasl, H., Pechotova, K., Pelisek, V., Sosnova, A., Zach, P., Ciesla, A., Hoover, B., Chapman, E., Marles-Wright, J., Moynihan, V., Owen, L., Rothschild-Mancinelli, B., Cuillery, E., Heng, J., Jacquot, V., Malsot, P., Meli, R., Pulver, C., Sarfatis, A., Steiner, L., Steininger, V., Van Tiel, N., Thouvenin, G., Uran, A., Baumgartner, L., Fomitcheva, A., Gerngross, D., Jagger, V., Meier, M., Michel, A., Bird, J., Brown, B., Burlington, T., Herring, D., Slack, J., Westwood, G., Wojcik, E., Bender, J., Donauer, J., Emig, R., Jesser, R., Neumann, J., Stuhn, L., Hasegawa, T., Kozakai, T., Maruyama, H., Colloms, S., Flynn, C., Lomeikaite, V., Provan, J., Ning, K., Tang, S., Wu, G., Yang, Y., Zeng, Z., Zhan, Y., Chu, P., Li, J., Yan, K., Athale, C. A., Bodkhe, S., Gangan, M., Gakhare, H., Jawale, Y., Kadam, S., Moghe, P., Mundhe, G., Khetan, N., Phadke, I., Uniyal, P., Zadey, S., Cottignie, I., Deprez, E., Deryckere, A., Janssens, J., Jonnaert, F., Malczewska, K., Pak, T., Robben, J., Thirukkumaran, O. M., Van Deuren, V., Vandebroek, L., Van Hese, L., Van Wonterghem, L., Verschooten, L., Wolter, M., Auty, J., Badge, R., Crawford, L., Dalgleish, R., Evans, A., Grundy, C., Kruczko, C., Karia, P., Glaister, G., Hakstol, R., Mate, S., Otero, K., Smith, D., Tingley, J., Wieden, H. J., Wang, H., Yao, N., Franz, M., Knoerlein, A., Koutsoubelis, N., Loechner, A. C., Mundt, M., Richter, A., Schauer, O., Buss, M., Tangirala, S., Teague, B., Huang, T., Song, X., Wei, Y., Zhang, Z., Cao, L., Li, C., Yang, K., Chen, Z., Fang, Y., Sun, L., Wang, W., Yang, Y., Adams, D., Colls, J., Timmons, J., Urick, D., Adrian, J. A., Akan, M., Chahibi, Y., Lale, R., Le Doujet, T., Roee, M. V., Abdirakhmanova, A., Orakov, A., Zhailauova, A., Liang, J., Ma, Y., Qin, Q., Su, Y., Han, J. Y., Hull, R., Kong, W. C., Lu, L. C., Quinton, D., Aubert, P., Bourdarias, J., Bugaud, O., Demon-Chaine, C., Hatin, I., Kaid-Slimane, I., Kang, S. K., Moatti, A., Ndiaye, C. F., Ananos, M., Arkhipenko, A., Bailly, V., Caput, J., Castillo, J., Chapet-Batlle, A., Cherrier, F., Demarta-Gatsi, C., Gopaul, D., Gugger, M., Lambert, C., Krauss, L., Vandendaele, A., Xiaojing, L., Xiaomei, L., Xunxun, L., Hansen, A. C., Kronborg, T., Pettersen, J. S., Calvet, C., Devlin, T. D., Fujishima, K., Greenberg, D., Ju, T., Kent, R., Kunin, D., Lieberman, E., McCutcheon, G., Nguyen, T., Rothschild, L., Shih, J. D., Takahashi, J., Thompson, K., Tran, F., Xiang, D., Richter, F., Xiaoran, Y., Xiangyue, H., Deng, C., Hua, S., Li, Y., Meng, X., Wang, B., Wang, Y., Wang, X., Xu, Z., Yan, J., Yan, M., Zhou, Y., Orozco, E. A. A., Bermúdez, J. A. C., Gómez, D. F., Castañeda, J. E. H., Navarro, D. C. M., Pérezávila, J. Y., Figueroa, M. F. S., Arroyo, M. F. S., Montesinos, O. A. S., Cruz, Á. F. R., Gutiérrez, C. R., Lona, A. P., Olivares, F. S., Iniesta, J. S. R., Silva, J. C. R., Ayukawa, S., Kashiwagi, T., Kiga, D., Minegishi, M., Shinohara, R., Tokuma, H., Yamazaki, Y., Yasunishi, S., Zixuan, E. S., Afzal, R., Carrigan, M., Moran, B., Mucha, M., Petrauskas, A., Marsden, S., Post, M., Rodenburg, A., Sanguesa, H., Van Der Does, M., Van Rijn, E., Van't Hof, M., De Bruin, Y., De Ferrante, H., Elschot, E., Jacobs, L., Muller, J. W., Nooijens, S., Vaassen, F., Van Der Putten, C., Van Leeuwen, E., Van Smeden, L., Zhu, K. K., Sabath, K., Sporbeck, K., Von Kügelgen, N., Wellinger, L., Braun, S., Ho, J., Mishra, Y., Sebastian, M., Von Chamier, L., Ahsan, F. M., Satyadi, M. A., Gunadhi, V., Kyriakakis, P., Lee, J., Thavarajah, W., Abtahi, K., Hand, R., Loke, C. M., Wahab, A., Zhu, I., Del Bianco, C., Chizzolini, F., Godino, E., Lentini, R., Mansy, S. S., Martin, N. Y., Pegorar, C. O., Cook, A., Kerns, T., Nielsen, C., Paskett, M., Torgesen, A., Lee, S., Ospovat, O., Raza, S., Shaykevich, D., Shilts, J., Bajorinaite, B., Bendorius, M., Rauluseviciute, I., Savickyte, I., Tumas, S., Buchser, W., Cryan, E., Golino, C., Halleran, A., Jacobs, T., LeFew, M., Maniaci, J., Marken, J., Saha, M., Vij, P., DeSanty, K., Mazza, J. & iGEM Interlab Study Contributors Mar 1 2016 In : PLoS One. 11, 3, e0150182

Research output: Contribution to journalArticle

reproducibility
promoter regions
fluorescence
Escherichia coli
Frangula
25 Citations

Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with escherichia coli

Maddamsetti, R., Lenski, R. E. & Barrick, J. E. 2015 In : Genetics. 200, 2, p. 619-631 13 p.

Research output: Contribution to journalArticle

Escherichia coli
Mutation
History
Bacteria
3 Citations

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation

Houser, J. R., Barnhart, C., Boutz, D. R., Carroll, S. M., Dasgupta, A., Michener, J. K., Needham, B. D., Papoulas, O., Sridhara, V., Sydykova, D. K., Marx, C. J., Trent, M. S., Barrick, J. E., Marcotte, E. M. & Wilke, C. O. Aug 1 2015 In : PLoS Computational Biology. 11, 8, e1004400

Research output: Contribution to journalArticle

proteins
Starvation
Escherichia coli
Glucose
Proteins
6 Citations

Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq

Deatherage, D. E., Traverse, C. C., Wolf, L. N. & Barrick, J. E. 2015 In : Frontiers in Genetics. 5, JAN, 468

Research output: Contribution to journalArticle

Mutation
Genome
Genes
Escherichia coli
Genomic Structural Variation
13 Citations

Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the lenski evolution experiment

Quandt, E. M., Gollihar, J., Blount, Z. D., Ellington, A. D., Georgiou, G. & Barrick, J. E. Oct 14 2015 In : eLife. 4, OCTOBER2015, e09696

Research output: Contribution to journalArticle

Citrate (si)-Synthase
Mutation
Common Bile Duct Diseases
Lod Score
Frangula